Systematic review and extension of the facts and theories or organic chemisry; includes the mechanicsm of reactions, structure, and sterochemistry.

A comprehensive survey of synthetic organic reactions and their application to the design and execution of syntheses of relatively complex organic substances.

Studies the theory and application of instrumental techniques in solving organic structural problems. Topics include ultraviolet and infrared absorption spectroscopy, nuclear magnetic resonance, mass spectrometry, rotatory dispersion, and circular dichroism.

This course provides an introduction to quantum mechanics for scientists and engineers interested in the properties and phenomena of atomic, molecular, and nanoscale matter. The foundational ideas of quantum mechanics are introduced and tools for exact and approximate solutions of the Schrodinger Equation are developed. Model systems, such as particle in a box, harmonic oscillator, hydrogen atom, hydrogen ion and molecule, crystalline solids, as well as time-dependent phenomena, such as spectroscopy, tunneling, and scattering, are examined as time permits. The course aims to provide the elementary background and tools necessary to read and advance modern research requiring a microscopic understanding of matter.

This course provides an introduction to statistical mechanics for graduate students or highly advanced undergraduates. The course begins with a review of thermodynamics and an introduction to the fundamental assumptions of equilibrium statistical mechanics, continues on to examine both non-interacting and interacting systems of interest, and finally introduces the basic concepts of non-equilibrium statistical mechanics.  Throughout the course, analytical and numerical tools are introduced to solve physically-motivated problems that demonstrate course concepts. Students will learn: (1) what entropy is and how and why it influences physical phenomena; (2) to identify when a system is at equilibrium and the implications in terms of the kinds of measurements and calculations that are possible for such systems; (2) to choose and make use of appropriate ensembles, free energies, and partition functions to explore and predict the behavior of a given system under specific conditions; (3) to explain the role of temperature and predict temperature-dependent effects; (4) how phase changes can emerge from simple physical rules governing the interactions between particles in a system; (5) to recognize and articulate the role of statistical mechanics in both research and every-day life; and (6) to critically evaluate the use of and developments in modern statistical mechanics through the careful reading of current research articles.

Introduces the practice and theory of modern chemical kinetics, emphasizing reactions occurring in gases, liquids, and on catalytic surfaces. Develops basic principles of chemical kinetics and describes current experimental and analytic techniques. Discusses the microscopic reaction dynamics underlying the macroscopic kinetics in terms of reactive potential energy surfaces. Develops statistical theories of reactions that simplify the description of the overall reaction dynamics. Includes the transition state theory, Rice-Ramsperger-Kassel-Marcus (RRKM) theory for unimolecular reactions, Kramers’ theory, Marcus electron transfer theory, and information theory. Presents current topics from the literature and illustrates applications of basic principles through problem-solving exercises.

Includes basic theoretical principles of modern molecular spectroscopy, including microwave, infrared, Raman, visible, and ultraviolet spectroscopy. Gas-phase systems will be emphasized.

This interdisciplinary course will introduce graduates and advanced undergraduates to molecules and their chemistry in different sources throughout the universe. Major topics include chemistry in interstellar clouds and star-forming regions, the kinetics of gas-phase and grain-surface reactions, astronomical spectroscopy, laboratory experiments, and astrochemical modeling. The class will cater to students with either an astronomy or chemistry background, to provide the knowledge and tools needed to understand the main themes and problems in astrochemistry. The course will also provide a foundation to those moving into astrochemistry research.

Introduces the electronic structure of atoms and simple molecules, including basic concepts and applications of symmetry and group theory. The chemistry of the main group elements is described using energetics, structure, and reaction pathways to provide a theoretical background. Emphasizes applying these concepts to predicting the stability and developing synthetic routes to individual compounds or classes.

Introduces the electronic structure of compounds of the transition metals using ligan field theory and molecular orbital theory. Describes the chemistry of coordination and organometallic compounds, emphasizing structure, reactivity, and synthesis. Examines applications to transformations in organic chemistry and to catalysis. 

Covers mathematical language which describes symmetry and focuses on its application to inorganic chemistry, determination of point groups, use of character tables, and construction of MO theory diagrams. This will be followed by application of these concepts to spectroscopic methods, e.g. Absorption, IR, Raman, NMR, magnetism, and EPR, etc. The material is intended to cover the theory and interpretation of standard spectroscopic techniques.

Covers an introduction to nanomaterials and to physical methods for nanomaterials characterization; synthesis, surface modification and assembly nanomaterials; and magnetic, optical and catalytic properties of nanomaterials. The course also highlights the importance of the design of nanomaterials for modern energy, environmental and biomedical applications.

Discusses the principles of main-group element chemistry with a focus on synthesis, structure, reactivity, and applications. This course is intended to provide sufficient background knowledge of the topics and techniques used in this field so that students should be able to understand and critically evaluate the current main-group literature.

Expose students to the emerging advances in chemistry and materials science that underpin technologies for energy conversion, storage and distribution and to place these in a real world context that reflects a rudimentary exposure to regulatory and economic facts controlling energy technology development and will emphasize concepts in “green chemistry and green engineering practices” that are emerging with global focus on sustainable technology.

This one-semester undergraduate/graduate course will focus on the modern applications of X-ray diffraction techniques in crystal and molecular structure determination. The class will also include powder diffraction and its application in X-ray structure analysis.

Introduces the components of biological macromolecules and the principles behind their observed structures. Examines the means by which enzymes catalyze transformations of other molecules, emphasizing the chemical principles involved, and describes key metabolic cycles and pathways, the enzymes that catalyze these reactions, and the ways in which these pathways are regulated.

Covers three main areas: (1) the structure and function of biological membranes, (2) complex biochemical systems and processes, including photosynthesis, oxidative phosphorylation, vision, neurotransmission, hormonal regulation, muscle contraction and microtubules, and (3) molecular biology, including DNA metabolism, protein synthesis, regulation of gene expression and recombinant DNA methodology.

Topics include principles of image formation; methods for sample preparation and chemical labeling; photophysics of fluorescent proteins and organic dyes; and computational image analysis and data processing. (3 credits)

Selected topics in advanced biological chemistry developed to the depth required for modern research.

Provide science graduate students interested in an academic career with training in teaching at the postsecondary level. Specifically, the course is intended to introduce instructional practices that have been empirically demonstrated to enhance students' learning & attitudes toward science & their associated learning theories. The students alos have an opportunity to develop a teaching philosophy as well as design, implement, and receive feedback on a lecture of their choice.

Advanced level survey of instrumental methods of analysis, theory and application of spectrochemical, electrochemical techniques; separations, surfaces, special topics, and recent developments from the literature.

An introduction to classic & modern approaches of chemical analysis of biological systems. Detection of analytes ranging from small molecules & proteins, to cells, to structured materials. Focus on immunoassays: ELISA, bead-based assays, & surface plasmon resonance for analytes in solution; ELISpot for cell secretions; flow cytometry for cells and beads; & immunostaining for biomaterials and tissue samples.

Theory and practice of separation science are introduced. Topics include theoretical aspects of separations, including equilibrium theory, flow, diffusion, and solution theory. Major analytical separation techniques covered include liquid chromatography, gas chromatography, and capillary electrophoresis.

Theory and practice of separation science are introduced. Topics include theoretical aspects of separations, including equilibrium theory, flow, diffusion, and solution theory. Major analytical separation techniques covered include liquid chromatography, gas chromatography, and capillary electrophoresis.  

Presents the analytical and physical science opportunities from the study of biosystems in engineered microsystems

This course is taken in the first semester of the graduate program and begins professional development for graduate students learning about the theory and practice of scientific research. The course functions primarily to familiarize students with the faculty research and tools for research at Virginia.

This course is designed to help graduate teaching assistants integrate learning theory and effective practices into their teaching with the goal of improving student learning by enhancing student engagement.

Offered in the spring semester of the first year, after students have joined a research laboratory to pursue their Ph.D., this course continues scientific professional development. Issues of safety in the laboratory, literature searching, ethical conduct in research, intellectual property, entrepreneurship, federal funding agencies, job opportunities in academe, industry, and national laboratories, curriculum vitae/resume writing, web-site creation, and effective written and oral communication skills are discussed. The class is designed to quickly focus students on their career path and to provide them with early opportunities to hone their skills in communicating their research plans and results.

This course is designed to help graduate students learn to communicate their research to non-technical audiences such as the public, the media, and policymakers.

The focus of this course is to prepare students for their Chemistry Ph.D. candidacy exam, an exam taken in the spring semester of their second year, by developing appropriate written and oral communication skills. In the fall semester before the exam, students in this course practice presenting their research and a critique of a journal article in the format of the exam.

This course aims to develop skill in scientific writing which is as essential for scientists as is learning the experimental techniques and analysis methods of their field.

• ASTR 5010 Astrophysical Processes
• ASTR 5340 Introductory Radio Astronomy
• ASTR 5420 Interstellar Medium
• ASTR 5430 Stellar Astrophysics

• BIOL 5070 Practical Aspects Light Microscopy in the Biological Sciences
• BIOL 7320 Signal Transduction: How Cells Talk to Each Other
• BIOL 7360 Cytokine Signaling

• BIOP 8020* Structural Biology (crystallography and cryo EM)
• BIOP 8050* Cellular Biophysics (Fluorescence imaging and spectroscopy, AFM, optical tweezers)
• BIOP 8030/31 Magnetic Resonance Spectroscopy of Macromolecules (parts I and II, each 2 units)
• BIOP 8130/31 Biological Membranes and Membrane Proteins (parts I and II, each 2 units

* BIOP 8020 and 8050 are each two credits and may be taken in sequence

• BME 6101 Engineering Physiology 1

• BME 6102 Engineering Physiology 2

• BME 6310 Instrumentation and Measurement in Medicine I

• BME 7641 Bioelectricity

• BME 7806 Biomedical Application of Genetic Engineering

• BME 8783 Advanced Magnetic Resonance Imaging

• BIMS 5012 Cell Structure Function
• BIMS 7100 Research Ethics
• BIMS 8131 Topics in Molecular Basis of Human Disease
• BIMS 8192 Biotechnology Research Seminar
• BIMS 8200 Fundamental Immunology
• BIMS 8380 Practical Use of Statistics in Biomedical Research

• CHE 5561 Special Topics in Chemical Engineering (e.g., Computational Chemistry in ChE)
• CHE 5562 Special Topics in Chemical Engineering (e.g., Energy Science and Engineering)
• CHE 6030 Green Engineering and Sustainability
• CHE 6442 Applied Surface Chemistry
• CHE 6447 Biochemical Engineering
• CHE 6448 Bioseparations Engineering
• CHE 6615 Advanced Thermodynamics
• CHE 6665 Techniques for Chemical Engineering Analysis and Design CHE 6561 Chemistry for Engineering Functional Materials

• CS 6160 Theory of Computation
• CS 6161 Design and Analysis of Algorithms
• CS 6444 Introduction to Parallel Computing

• EDLF 5260 Cognitive Psychology and Education
• EDLF 5330 Quantitative Methods and Data Analysis I
• EDLF 7404 Qualitative Analysis
• EDLF 7410 Mixed Methods Research Design

• ECE 5241 Optics and Lasers

• APMA 6150 Linear Algebra
• APMA 6430 Statistics for Engineers and Scientists
• APMA 6440 Applied Partial Differential Equations

• EVGE 5850 Geochemistry
• EVGE 5860 Isotope Geochemistry

• MSE 6010 Electronic and Crystal Structure of Materials
• MSE 6020 Defects and Microstructure in Materials
• MSE 6080 Chemical and Electrochemical Properties
• MSE 6120 Characterization of Materials
• MSE 6130 Transmission Electron Microscope
• MSE 6230 Thermodynamics and Phase Equilibria of Materials
• MSE 6270 Introduction to Atomistic Simulations
• MSE 6592 Topics in Materials Science
• MSE 6670 Electronic, Optical and Magnetic Properties of Materials
• MSE 7220 Surface Science
• MSE 7592 Advanced Topics in Materials Science

• MAE 6592 Introduction to Density Functional Theory (DFT) and Electronic Structure Calculations

• MATH 5210 Advanced Calculus with Applied Mathematics
• MATH 5220 Partial Differential Equations and Applied Mathematics
• MATH 5651 Advanced Linear Algebra

• MICR 8401 Microbial Pathogenesis

• PHY 5060 Molecular Physiology: From Molecular Machines to Biological Information Processing
• PHY 8130 Structure and Function of Biological Membranes

• NESC 7030 Neurobiology

• PHAR 9010 Human Pharmacology
• PHAR 9020 Molecular Characterization of Drug Targets
• PHAR 9080 Biochemical Pharmacology
• PHAR 9003* Molecular Targets
• PHAR 9004* Discovering Drugs

* Two credit courses that are often taken as a sequence

• PHYS 5190 Electronics Lab
• PHYS 5310 Optics
• PHYS 5320 Fundamentals of Photonics
• PHYS 5620 Introduction to Solid State Physics
• PHYS 5630 Computational Physics I
• PHYS 5820 Introduction to Nanophysics
• PHYS 7420 Electricity and Magnetism I
• PHYS 7610 Quantum Theory I
• PHYS 8260 Ultrafast Laser Spectroscopy
• PHYS 8310 Statistical Mechanics